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mavis/overlay

check_overlay_args()

parse the overlay options and check the formatting

def check_overlay_args(args, parser):

Args

  • args
  • parser

main()

generates an overlay diagram

def main(
    gene_name: str,
    output: str,
    config: Dict,
    buffer_length: int,
    read_depth_plots,
    markers: List[Tuple[str, int, int]],
    ymax_color='#FF0000',
    **kwargs,
):

Args

  • gene_name (str)
  • output (str)
  • config (Dict)
  • buffer_length (int)
  • read_depth_plots
  • markers (List[Tuple[str, int, int]])
  • ymax_color