MAVIS integrates with SV callers, job schedulers, and aligners. While some of these dependencies are optional, all currently supported options are detailed below. The versions column in the tables below list all the versions which were tested for each tool. Each version listed is known to be compatible with MAVIS.
MAVIS v3 uses snakemake to handle job scheduling
When setting the aligner you will also need to set the aligner_reference to match