mavis/convert/constants

TOOL_SVTYPE_MAPPING

TOOL_SVTYPE_MAPPING = {v: [v] for v in SVTYPE.values()}  # type: ignore

TRACKING_COLUMN

TRACKING_COLUMN = 'tracking_id'

class SUPPORTED_TOOL

inherits MavisNamespace

Supported Tools used to call SVs and then used as input into MAVIS

Attributes

• CHIMERASCAN: chimerascan [Iyer-2011]_
• DEFUSE: defuse [McPherson-2011]_
• DELLY: delly [Rausch-2012]_
• MANTA: manta [Chen-2016]_
• PINDEL: pindel [Ye-2009]_
• TA: transabyss [Robertson-2010]_