mavis/annotate/constants
PASS_FILENAME
PASS_FILENAME = 'annotations.tab'
SPLICE_SITE_RADIUS
SPLICE_SITE_RADIUS = 2
DONOR_SEQ
DONOR_SEQ = [
re.compile('(AG)(GT[AG]AG)'),
re.compile('([CA]AG)(GTA)'),
]
ACCEPTOR_SEQ
ACCEPTOR_SEQ = [
re.compile('([TC]{8}[ATCG]CAG)([GA][ATCG])'),
re.compile('([TC]{9}TAG)([GA][ATCG])'),
re.compile('([TC]{8}[ATCG]AAG)([GA][ATCG])'),
]
class SPLICE_SITE_TYPE
inherits MavisNamespace
Attributes
- DONOR (
int
) - ACCEPTOR (
int
)