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MAVIS mavis

MAVIS

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Background
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Configuration
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Inputs
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Package
Package
- Mavis
  Mavis
  - mavis mavis
    Table of contents
    
    version
  - mavis.align
  - mavis.assemble
  - mavis.blat
  - mavis.breakpoint
  - mavis.config
  - mavis.constants
  - mavis.error
  - mavis.interval
  - mavis.main
  - mavis.util
  - Annotate
    Annotate
    
    Sub-package Documentation
    
    mavis.annotate.base
    
    mavis.annotate.file_io
    
    mavis.annotate.fusion
    
    mavis.annotate.genomic
    
    mavis.annotate.main
    
    mavis.annotate.protein
    
    mavis.annotate.splicing
    
    mavis.annotate.variant
  - Bam
    Bam
    
    mavis.bam.cache
    
    mavis.bam.cigar
    
    mavis.bam.read
    
    mavis.bam.stats
  - Cluster
    Cluster
    
    Sub-package Documentation
    
    mavis.cluster.cluster
    
    mavis.cluster.main
  - Illustrate
    Illustrate
    
    mavis.illustrate.constants
    
    mavis.illustrate.diagram
    
    mavis.illustrate.elements
    
    mavis.illustrate.scatter
    
    mavis.illustrate.util
  - Pairing
    Pairing
    
    Sub-package Documentation
    
    mavis.pairing.main
    
    mavis.pairing.pairing
  - Schedule
    Schedule
    
    mavis.schedule.constants
    
    mavis.schedule.job
    
    mavis.schedule.local
    
    mavis.schedule.pipeline
    
    mavis.schedule.scheduler
  - Summary
    Summary
    
    Sub-package Documentation
    
    mavis.summary.main
    
    mavis.summary.summary
  - Tools
    Tools
    
    mavis.tools
    
    mavis.tools.breakdancer
    
    mavis.tools.chimerascan
    
    mavis.tools.cnvnator
    
    mavis.tools.starfusion
    
    mavis.tools.transabyss
    
    mavis.tools.vcf
  - Validate
    Validate
    
    Sub-package Documentation
    
    mavis.validate.base
    
    mavis.validate.call
    
    mavis.validate.evidence
    
    mavis.validate.main
Tutorials
Tutorials
- MAVIS (Full) Tutorial
- MAVIS (Mini) Tutorial

Table of contents

version

mavis

holds submodules related to structural variants

version

__version__ = pkg_resources.require('mavis')[0].version

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