constants module

mavis.schedule.constants.MAIL_TYPE = MavisNamespace(ALL='ALL', BEGIN='BEGIN', END='END', FAIL='FAIL', NONE='NONE')

When the scheduler should notify mail_user about a job

• ALL - All other options (except none)
• BEGIN - Send an email when the job starts
• END - Send an email when the job has terminated
• FAIL - Send an email if the job fails
• NONE - Do not send email

mavis.schedule.constants.OPTIONS = WeakMavisNamespace(annotation_memory=12000, concurrency_limit=None, import_env=True, mail_type='NONE', mail_user='', memory_limit=16000, queue='', remote_head_ssh='', scheduler='SLURM', time_limit=57600, trans_validation_memory=18000, validation_memory=16000)

submission options

• annotation_memory
• concurrency_limit
• import_env
• mail_type
• mail_user
• memory_limit
• queue
• remote_head_ssh
• scheduler
• time_limit
• trans_validation_memory
• validation_memory

Type:MavisNamespace

mavis.schedule.constants.SCHEDULER = MavisNamespace(LOCAL='LOCAL', SGE='SGE', SLURM='SLURM', TORQUE='TORQUE')

scheduler types

• LOCAL
• SGE
• SLURM
• TORQUE

Type:MavisNamespace

mavis.schedule.constants.cumulative_job_state(states)

Given a set of states, return a single state based on the reporting priority