tools module¶
-
mavis.tools.
SUPPORTED_TOOL
= MavisNamespace(BREAKDANCER='breakdancer', BREAKSEQ='breakseq', CHIMERASCAN='chimerascan', CNVNATOR='cnvnator', DEFUSE='defuse', DELLY='delly', MANTA='manta', MAVIS='mavis', PINDEL='pindel', STARFUSION='starfusion', STRELKA='strelka', TA='transabyss', VCF='vcf')¶ Supported Tools used to call SVs and then used as input into MAVIS
- chimerascan [Iyer-2011]
- defuse [McPherson-2011]
- delly [Rausch-2012]
- manta [Chen-2016]
- pindel [Ye-2009]
- transabyss [Robertson-2010]