main module

mavis.pairing.main.main(inputs, output, annotations, flanking_call_distance=50, split_call_distance=20, contig_call_distance=10, spanning_call_distance=20, start_time=1558720095, **kwargs)

Parameters:

• inputs (List of str) – list of input files to read
• output (str) – path to the output directory
• flanking_call_distance (int) – pairing distance for pairing with an event called by flanking read pair
• split_call_distance (int) – pairing distance for pairing with an event called by split read
• contig_call_distance (int) – pairing distance for pairing with an event called by contig or spanning read